Schedule: BioPathways @ ISMB 2010

The 11th BioPathways meeting will be held on July 9th, in Boston, at the Hynes Convention Center, Room 201.

More details about the meeting here.

Here is the tentative schedule.

Long talks are 40', short ones 20'.

8:45 - 9:00 Welcome (Room 201)

9:00 - 10:15
l1 Randy Rettberg (MIT) - IGEM and the Registry of Standard Biological Parts
s1 Livnat Jerby - Tel-Aviv University - Human Metabolic Network Analysis

10:15 - 10:45 Coffee Break (Hall C Pre-function area)

10:45 - 12:30
l2 James Faeder (University of Pittsburgh) - Rule-Based Modeling of Biochemical Systems with BioNetGen
s2 Robin Haw - OICR - www.reactome.org - The Reactome Revolutions
l3 Eric Deeds (Harvard Medical School) - Competitive Self-assembly

12:30 - 1:45 Lunch (Hall C)

1:45 - 3:30
l4 Bud Mishra (NYU, Courant Institute) - Where Biology meets Computing
s4 Sumit Jha (CMU) - Parameter Synthesis for Stochastic Biochemical Models from High Level Behavioral Specifications
s3 Joe Whitney - U. of Toronto - baderlab.org/Software/ActivePathways - Active Pathways: visualization and analysis of pathways and expression data
s9 Luiz Miguel Camargo - Merck - Pathway-based analysis of genome-wide siRNA screens identifies the regulatory landscape of APP processing

3:30 - 4:00 Coffee Break (Hall C Pre-function area)

4:00 - 6:20
l5 Will Chen (Harvard Medical School) - Experimentation and Parameterization of Models
s6 Emek Demir - MSKCC - www.biopax.org - An Evaluation of the BioPAX Ontology from Level 2 to Level 3
s5 Eric Neumann (Clinical Semantics Group) - Accessing and Visualizing BioPax using the BBN S*QL CytoScape Plug-In: A Linked Data Approach
s7 Suzanne Paley - SRI - biocyc.org - Pathway Tools version 14.0
s8 Cliff Joslyn - Pacific Northwest National Laboratory - Semantic Identification of Pathway Genes for the DOE Systems Biology Knowledgebase
s10 Michel Dumontier - Carleton University, Ottawa - The Translational Medicine Ontology: Driving personalized medicine by bridging the gap from bedside to bench